Data compiled in DrosOmics
D. melanogaster reference genomes
DrosOmics compiles 52 high-quality genome assemblies that have been obtained using long-read sequencing technologies.
| Genomes | Source locations | Data source |
|---|---|---|
| 32 genomes | 12 localities from 8 countries: America (1), Europe (7) | Rech et al. (2022) |
| 14 genomes | 14 localities from 11 countries: Africa (2), Europe (2), North America (1), North Atlantic Ocean (1), South America (2), Asia (3) | Chakraborty et al. (2019) |
| 5 genomes | 5 localities from 5 countries: Africa (1), Europe (1), America (1), Asia (1), Oceania (1) | Long et al. (2018) |
| 1 genome (ISO-1) | America | Solares et al. (2018) |
Functional data
DrosOmics compiles over 90 datasets on RNA-seq, ChIP-seq and ATAC-seq experiments from different studies.
| Functional data | Data source |
|---|---|
| Whole-body RNA-seq for eight RAL strains | Everett, L. J. et al. (2020) Gene expression networks in the Drosophila Genetic Reference Panel. Genome Res., 30, 485–496. |
| RNA-seq and ATAC-seq from gut for four strains in basal conditions and malathion treatment | Salces-Ortiz, J. et al. (2020) Transposable elements contribute to the genomic response to insecticides in Drosophila melanogaster. Phil. Trans. R. Soc. B, 375, 20190341–20190341. |
| Whole-body RNA-seq for six strains in basal conditions and copper treatment | Green, L. et al. (2022) The genomic basis of copper tolerance in Drosophila is shaped by a complex interplay of regulatory and environmental factors. BMC Biol., 20:275. |
| Whole-body RNA-seq for six strains in basal conditions and desiccation treatment | Horváth, V. et al. (2022) Gene expression differences consistent with water loss reduction underlie desiccation tolerance of natural Drosophila populations. BMC Biol., 21:35. |
| RNA-seq and ChIP-seq for adult head, gut and ovary in basal conditions | Coronado-Zamora, M., Salces-Ortiz, J. and González, J. (2023) DrosOmics: A browser to explore -omics vriation across high-quality reference genomes from natural populations of D. melanogaster. Mol. Biol. Evol. 40:4, msad075. |